SyBBURE Research Group

JOURNAL CLUB BLOG

Wednesday, September 1, 2010

Journal Club for Thursday 9/2

Hi all,

This Thursday from 12:15 to 1:10, Liwei and I will be presenting:

"A Synthetic Genetic Edge Detection Program" by Tabor, et al

The .pdf is attached to the email sent by Cody on Tuesday.

Please try to have your PCRs in by 8pm this evening.

Thanks!

7 comments:

  1. Rosie Korman
    Tabor
    1. The authors have programmed an E. coli population to detect light-dark edges.
    2. It's cool, but how is this practically useful?
    3. Other circuit parts that living organisms can be programmed into.

    ReplyDelete
  2. Brian Akselrad
    Tabor

    1. E. coli have been modified to work as a circuit to sense edges based on light vs. dark.
    2. I dont understand the different images: mask, in vivo, in silico.
    3. Applications?

    ReplyDelete
  3. Will Matloff
    Tabor

    1. A massively parallel edge-detection algorithm was implemented in a population of E. coli.

    2. What exactly is going on biologically with this?

    3. Overview of synthetic biology.

    ReplyDelete
  4. Ayeeshik kole
    Tabor

    1. The group generated an algorithm that programs an E. coli community to be able to identify light-dark edges.

    2. What do they mean by bottom-up study?

    3. How you can genetically program electronic circuits.

    ReplyDelete
  5. Erica Curtis
    Tabor
    1. A population of E. coli have been genetically encoded to detect light-dark edges.
    2. How does the "Communication" circuit work? (Fig. 3B)
    3. Give an example showing in parallel the biology and circuitry.

    ReplyDelete
  6. Trevan Locke
    Tabor
    1. The authors have engineered an E. coli population that can detect light-dark edges.
    2. I may have missed the explanation on my rather quick reading of the article, but I don't understand how they programmed the E. coli to detect the edge. Can you explain?
    3. Applications?
    4. This is pretty cool, also sorry for being late.

    ReplyDelete
  7. Katherine Roth
    Tabor
    1. E. Coli are genetically modified to detect light-dark edges.
    2. Please go over some of the more specific steps of the programming, as in Fig.1D.
    3. Why the logic/circuitry approach?

    ReplyDelete

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